Workflows

Streamline complex analyses with ready-to-use workflows.

Transcriptomics

Bulk RNAseq Data Processing

Bulk RNA sequencing data processing with the nf-core rnaseq pipeline on Mantle

Bulk RNAseq Data Processing

Bulk RNA sequencing data processing with the nf-core rnaseq pipeline on Mantle

Bulk RNAseq Data Processing

Bulk RNA sequencing data processing with the nf-core rnaseq pipeline on Mantle

Bulk RNAseq Data Processing

Bulk RNA sequencing data processing with the nf-core rnaseq pipeline on Mantle

Differential Gene Expression from Bulk RNAseq

Differential gene expression from bulk RNAseq using Scanpy on Mantle

Differential Gene Expression from Bulk RNAseq

Differential gene expression from bulk RNAseq using Scanpy on Mantle

Differential Gene Expression from Bulk RNAseq

Differential gene expression from bulk RNAseq using Scanpy on Mantle

Differential Gene Expression from Bulk RNAseq

Differential gene expression from bulk RNAseq using Scanpy on Mantle

Visium Data Processing

10x Genomics Visium spatial transcriptomics data processing with the spaceranger count pipeline on Mantle

Visium Data Processing

10x Genomics Visium spatial transcriptomics data processing with the spaceranger count pipeline on Mantle

Visium Data Processing

10x Genomics Visium spatial transcriptomics data processing with the spaceranger count pipeline on Mantle

Visium Data Processing

10x Genomics Visium spatial transcriptomics data processing with the spaceranger count pipeline on Mantle

Visium Spatial Transcriptomics Visualizations

Visualizing results from Visium spatial transcriptomics with Scanpy on Mantle

Visium Spatial Transcriptomics Visualizations

Visualizing results from Visium spatial transcriptomics with Scanpy on Mantle

Visium Spatial Transcriptomics Visualizations

Visualizing results from Visium spatial transcriptomics with Scanpy on Mantle

Visium Spatial Transcriptomics Visualizations

Visualizing results from Visium spatial transcriptomics with Scanpy on Mantle

Element Bases2Fastq Demultiplexing

Demultiplexing Element AVITI base calls with the Bases2Fastq pipeline on Mantle

Element Bases2Fastq Demultiplexing

Demultiplexing Element AVITI base calls with the Bases2Fastq pipeline on Mantle

Element Bases2Fastq Demultiplexing

Demultiplexing Element AVITI base calls with the Bases2Fastq pipeline on Mantle

Element Bases2Fastq Demultiplexing

Demultiplexing Element AVITI base calls with the Bases2Fastq pipeline on Mantle

Imaging

Cellular Segmentation Using Cellpose

Cellular segmentation from fluorescence microscopy images using Cellpose on Mantle

Cellular Segmentation Using Cellpose

Cellular segmentation from fluorescence microscopy images using Cellpose on Mantle

Cellular Segmentation Using Cellpose

Cellular segmentation from fluorescence microscopy images using Cellpose on Mantle

Cellular Segmentation Using Cellpose

Cellular segmentation from fluorescence microscopy images using Cellpose on Mantle

Cell Tracking Using SC-Track

Tracking single cells in time-lapse microscopy image sequences using SC-Track

Cell Tracking Using SC-Track

Tracking single cells in time-lapse microscopy image sequences using SC-Track

Cell Tracking Using SC-Track

Tracking single cells in time-lapse microscopy image sequences using SC-Track

Cell Tracking Using SC-Track

Tracking single cells in time-lapse microscopy image sequences using SC-Track

Image Analysis Using CellProfiler

Running CellProfiler pipelines on Mantle

Image Analysis Using CellProfiler

Running CellProfiler pipelines on Mantle

Image Analysis Using CellProfiler

Running CellProfiler pipelines on Mantle

Image Analysis Using CellProfiler

Running CellProfiler pipelines on Mantle

Fluorescence Quantification After Segmentation

Fluorescence quantification after image segmentation using Cellpose

Fluorescence Quantification After Segmentation

Fluorescence quantification after image segmentation using Cellpose

Fluorescence Quantification After Segmentation

Fluorescence quantification after image segmentation using Cellpose

Fluorescence Quantification After Segmentation

Fluorescence quantification after image segmentation using Cellpose

Miscellaneous

Flow Cytometry File Parsing

Parsing a flow cytometry FCS file using FCSparser

Flow Cytometry File Parsing

Parsing a flow cytometry FCS file using FCSparser

Flow Cytometry File Parsing

Parsing a flow cytometry FCS file using FCSparser

Flow Cytometry File Parsing

Parsing a flow cytometry FCS file using FCSparser

Declarative Plotting

Beyond Matplotlib -- Declarative plotting in Python

Declarative Plotting

Beyond Matplotlib -- Declarative plotting in Python

Declarative Plotting

Beyond Matplotlib -- Declarative plotting in Python

Declarative Plotting

Beyond Matplotlib -- Declarative plotting in Python

Don't see what you need?

We're always expanding our collection of examples and templates. Let us know what you're working on, and we'll whip up an example just for you.

Request a Template

Don't see what you need?

We're always expanding our collection of examples and templates. Let us know what you're working on, and we'll whip up an example just for you.

Don't see what you need?

We're always expanding our collection of examples and templates. Let us know what you're working on, and we'll whip up an example just for you.

Request a Template

Don't see what you need?

We're always expanding our collection of examples and templates. Let us know what you're working on, and we'll whip up an example just for you.

Bridging Biotech

Sitemap

Bridging Biotech

Sitemap

Bridging Biotech

Sitemap

Sitemap

Bridging Biotech